Hi-C comprehensively detects genome-wide chromatin interactions in the cell nucleus by combining 3C and next-generation sequencing (NGS) approaches.

Query and visualize Capture Hi-C data, by simply typing in a gene name, SNP ID, or a genomic locus. Queries only work with JavaScript enabled!

Hic format is an indexed binary format designed to permit fast random access to contact matrix heatmaps.

Hi-C is a high-throughput genomic and epigenomic technique designed to capture the three-dimensional (3D) conformation of chromatin within the nucleus.

Chromosome conformation capture-based methods such as Hi-C have become mainstream techniques for the study of the 3D organization of genomes.

HiCExplorer provides a variety of tools for a complete Hi-C data analysis, starting with tools to control the quality of data to create, adjust, ...

Here we present a data processing and interaction calling toolkit (CHiCANE), specialized for the analysis and meaningful interpretation of CHi-C assays.

HiC-Pro was designed to process Hi-C data, from raw fastq files (paired-end Illumina data) to normalized contact maps. It supports the main Hi-C protocols, ...

Chromosome conformation capture is a research method that allows researchers to observe interactions between genetic loci that are in close contact in the 3- ...

Hi-C is an assay that uses DNA-DNA proximity ligation to identify long range chromatin contacts in an unbiased, genome-wide fashion.